Index

A

acds module acds.archetypes module acds.archetypes.esn module acds.archetypes.hcornn module acds.archetypes.pron module acds.archetypes.rnn module acds.archetypes.ron module acds.archetypes.run module acds.archetypes.trainable_pron module acds.archetypes.utils module acds.archetypes.vdpon module acds.benchmarks module acds.benchmarks.adiac module acds.benchmarks.adiac.dataset module acds.benchmarks.adiac.getter module acds.benchmarks.cifar10 module

acds.benchmarks.libras module acds.benchmarks.mackey_glass module acds.benchmarks.mallat module acds.benchmarks.mnist module acds.benchmarks.rc_dataset module acds.benchmarks.touchsensor module acds.benchmarks.trace module acds.evolutionary module acds.evolutionary.environment module acds.evolutionary.experiment module acds.evolutionary.run module acds.evolutionary.utils module adapt_named_time_series() (in module robots_demo.squid_inference_realtime) adapt_numeric_time_series() (in module robots_demo.squid_inference_realtime) adapt_time_series_for_inference() (in module robots_demo.squid_inference_realtime) AdiacDataset (class in acds.benchmarks.adiac.dataset) angle_to_unit_vector() (acds.archetypes.run.UnicycleNetwork method) antisymmetric_matrix() (in module acds.archetypes.utils) AvalancheRON (class in experiments.sclbridge.wrapper)

C

cell() (acds.archetypes.hcoRNN method) (acds.archetypes.hcornn.hcoRNN method) (acds.archetypes.MultistablePhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.PhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.pron.MultistablePhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.pron.PhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.RandomizedOscillatorsNetwork method) (acds.archetypes.ron.RandomizedOscillatorsNetwork method) (acds.archetypes.trainable_pron.TrainedPhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.TrainedPhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.vdpon.VanDerPolOscillatorsNetwork method) change_season() (acds.evolutionary.environment.SwarmForagingEnv method) checkpoint_feature_indices() (in module robots_demo.squid_inference_realtime)

close() (acds.evolutionary.environment.SwarmForagingEnv method) collect_activations() (in module experiments.mnist_run) compute_syn_grads() (experiments.equilibrium_propagation.models.P_MLP method) (experiments.equilibrium_propagation.models.RON method) compute_update() (acds.archetypes.GRU_DFA method) (acds.archetypes.rnn.GRU_DFA method) (acds.archetypes.rnn.RNN_DFA method) (acds.archetypes.RNN_DFA method) copy() (in module experiments.equilibrium_propagation.models) count_parameters() (in module acds.archetypes.utils) create_gif() (in module acds.evolutionary.utils) create_initial_state() (acds.evolutionary.environment.SwarmForagingEnv method) ctrd_hard_sig() (in module experiments.equilibrium_propagation.models)

D

data_row_to_file_row() (in module robots_demo.squid_inference_realtime) DeepReservoir (class in acds.archetypes) (class in acds.archetypes.esn)

default_normalized_gif_file() (in module robots_demo.squid_inference_realtime) draw_net() (in module acds.evolutionary.utils) drift() (acds.evolutionary.experiment.LifelongEvoSwarmExperiment method)

E

eaEvoStick() (in module acds.evolutionary.utils) eaSimpleWithElitism() (in module acds.evolutionary.utils) evaluate() (in module experiments.equilibrium_propagation.models) evaluate_TS() (in module experiments.equilibrium_propagation.models) experiments module experiments.attractors_collective module experiments.attractors_single module experiments.equilibrium_propagation module

experiments.equilibrium_propagation.models module experiments.equilibrium_propagation.pendigits_dataset module experiments.mnist_run module experiments.sclbridge module experiments.sclbridge.wrapper module experiments.utils module

F

file_signature() (in module robots_demo.squid_inference_realtime) final_gif_update_message() (in module robots_demo.squid_inference_realtime) finite_true_positions_or_none() (in module robots_demo.squid_inference_realtime) forward() (acds.archetypes.DeepReservoir method) (acds.archetypes.esn.DeepReservoir method) (acds.archetypes.esn.ReservoirCell method) (acds.archetypes.esn.ReservoirLayer method) (acds.archetypes.GRU_DFA method) (acds.archetypes.hcoRNN method) (acds.archetypes.hcornn.hcoRNN method) (acds.archetypes.LSTM method) (acds.archetypes.MultistablePhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.PhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.pron.MultistablePhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.pron.PhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.RandomizedOscillatorsNetwork method) (acds.archetypes.rnn.GRU_DFA method) (acds.archetypes.rnn.LSTM method) (acds.archetypes.rnn.RNN_DFA method) (acds.archetypes.RNN_DFA method) (acds.archetypes.ron.RandomizedOscillatorsNetwork method) (acds.archetypes.run.UnicycleNetwork method) (acds.archetypes.run.UnicycleReservoir method) (acds.archetypes.trainable_pron.TrainedPhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.TrainedPhysicallyImplementableRandomizedOscillatorsNetwork method) (acds.archetypes.UnicycleReservoir method) (acds.archetypes.vdpon.VanDerPolOscillatorsNetwork method) (experiments.equilibrium_propagation.models.P_MLP method) (experiments.equilibrium_propagation.models.RON method) (experiments.sclbridge.wrapper.AvalancheRON method)

G

generated_time_values() (in module robots_demo.squid_inference_realtime) get_adiac_data() (in module acds.benchmarks) (in module acds.benchmarks.adiac.getter) get_cifar10_data() (in module acds.benchmarks) (in module acds.benchmarks.cifar10) get_hidden_topology() (in module acds.archetypes.utils) get_input_fn() (in module acds.archetypes.pron) get_libras_data() (in module acds.benchmarks) (in module acds.benchmarks.libras) get_mackey_glass() (in module acds.benchmarks) (in module acds.benchmarks.mackey_glass)

get_mackey_glass_windows() (in module acds.benchmarks) (in module acds.benchmarks.mackey_glass) get_mallat_data() (in module acds.benchmarks) (in module acds.benchmarks.mallat) get_mnist_data() (in module acds.benchmarks) (in module acds.benchmarks.mnist) get_trace_data() (in module acds.benchmarks) (in module acds.benchmarks.trace) gif_true_positions_or_none() (in module robots_demo.squid_inference_realtime) gif_update_message() (in module robots_demo.squid_inference_realtime) GRU_DFA (class in acds.archetypes) (class in acds.archetypes.rnn)

H

hard_sigmoid() (in module experiments.equilibrium_propagation.models)

hcoRNN (class in acds.archetypes) (class in acds.archetypes.hcornn)

I

init_hidden() (acds.archetypes.esn.ReservoirLayer method) init_neurons() (experiments.equilibrium_propagation.models.P_MLP method) (experiments.equilibrium_propagation.models.RON method)

initHidden() (acds.archetypes.rnn.RNN_DFA method) (acds.archetypes.RNN_DFA method) inverse_sigmoid() (in module acds.evolutionary.utils) is_numeric_row() (in module robots_demo.squid_inference_realtime)

L

LifelongEvoSwarmExperiment (class in acds.evolutionary.experiment) load_experiment_json() (in module acds.evolutionary.utils)

load_logbook_json() (in module acds.evolutionary.utils) LSTM (class in acds.archetypes) (class in acds.archetypes.rnn)

M

main() (in module acds.evolutionary.run) (in module experiments.attractors_collective) (in module experiments.attractors_single) (in module robots_demo.squid_inference_realtime) make_expected_time_series() (in module robots_demo.squid_inference_realtime) make_initial_state() (in module experiments.mnist_run) make_input_map() (in module experiments.mnist_run) make_pools() (in module experiments.equilibrium_propagation.models) module acds acds.archetypes acds.archetypes.esn acds.archetypes.hcornn acds.archetypes.pron acds.archetypes.rnn acds.archetypes.ron acds.archetypes.run acds.archetypes.trainable_pron acds.archetypes.utils acds.archetypes.vdpon acds.benchmarks acds.benchmarks.adiac acds.benchmarks.adiac.dataset acds.benchmarks.adiac.getter acds.benchmarks.cifar10 acds.benchmarks.libras acds.benchmarks.mackey_glass acds.benchmarks.mallat acds.benchmarks.mnist acds.benchmarks.rc_dataset acds.benchmarks.touchsensor acds.benchmarks.trace acds.evolutionary acds.evolutionary.environment acds.evolutionary.experiment acds.evolutionary.run acds.evolutionary.utils experiments experiments.attractors_collective experiments.attractors_single experiments.equilibrium_propagation experiments.equilibrium_propagation.models experiments.equilibrium_propagation.pendigits_dataset experiments.mnist_run experiments.sclbridge experiments.sclbridge.wrapper experiments.utils robots_demo robots_demo.squid_inference_realtime robots_demo.train_cobot_classification robots_demo.train_cobot_regression robots_demo.train_squid robots_demo.train_squid_real robots_demo.train_squid_real_topology robots_demo.train_squid_topology robots_demo.train_tomato

move_static_tensors() (in module experiments.mnist_run) MultistablePhysicallyImplementableRandomizedOscillatorsNetwork (class in acds.archetypes) (class in acds.archetypes.pron) my_hard_sig() (in module experiments.equilibrium_propagation.models) my_init() (in module experiments.equilibrium_propagation.models) my_sigmoid() (in module experiments.equilibrium_propagation.models)

N

neat_sigmoid() (in module acds.evolutionary.utils) normalize_column_name() (in module robots_demo.squid_inference_realtime) normalize_features() (in module robots_demo.train_cobot_classification) (in module robots_demo.train_cobot_regression) (in module robots_demo.train_squid) (in module robots_demo.train_squid_real) (in module robots_demo.train_squid_real_topology) (in module robots_demo.train_squid_topology) (in module robots_demo.train_tomato)

normalize_target_values() (in module robots_demo.squid_inference_realtime) normalize_targets() (in module robots_demo.train_cobot_regression) (in module robots_demo.train_squid) (in module robots_demo.train_squid_real) (in module robots_demo.train_squid_real_topology) (in module robots_demo.train_squid_topology) normalized_target_rmse() (in module robots_demo.squid_inference_realtime)

P

P_MLP (class in experiments.equilibrium_propagation.models) pairwise_differences() (acds.archetypes.run.UnicycleNetwork method) parse_args() (in module experiments.mnist_run) pca() (in module experiments.attractors_single) PenDigitsDataset (class in experiments.equilibrium_propagation.pendigits_dataset) Phi() (experiments.equilibrium_propagation.models.P_MLP method) (experiments.equilibrium_propagation.models.RON method) Phi_statey() (experiments.equilibrium_propagation.models.RON method)

Phi_statez() (experiments.equilibrium_propagation.models.RON method) PhysicallyImplementableRandomizedOscillatorsNetwork (class in acds.archetypes) (class in acds.archetypes.pron) plot_combined_pca() (in module experiments.attractors_collective) plot_evolution() (in module acds.evolutionary.utils) predict_window_targeting_row() (in module robots_demo.squid_inference_realtime) print_kinematic_matrix() (in module acds.evolutionary.utils) print_observations() (acds.evolutionary.environment.SwarmForagingEnv method) process_observation() (acds.evolutionary.environment.SwarmForagingEnv method)

R

RandomizedOscillatorsNetwork (class in acds.archetypes) (class in acds.archetypes.ron) RCDataset (class in acds.benchmarks.rc_dataset) read_text_time_series_file() (in module robots_demo.squid_inference_realtime) read_time_series_file() (in module robots_demo.squid_inference_realtime) render() (acds.evolutionary.environment.SwarmForagingEnv method) ReservoirCell (class in acds.archetypes.esn) ReservoirLayer (class in acds.archetypes.esn) reset() (acds.evolutionary.environment.SwarmForagingEnv method) RNN_DFA (class in acds.archetypes) (class in acds.archetypes.rnn) robots_demo module robots_demo.squid_inference_realtime module robots_demo.train_cobot_classification module

robots_demo.train_cobot_regression module robots_demo.train_squid module robots_demo.train_squid_real module robots_demo.train_squid_real_topology module robots_demo.train_squid_topology module robots_demo.train_tomato module RON (class in experiments.equilibrium_propagation.models) run() (acds.evolutionary.experiment.LifelongEvoSwarmExperiment method) run_experiment() (in module experiments.mnist_run) run_genome() (acds.evolutionary.experiment.LifelongEvoSwarmExperiment method) run_realtime_inference() (in module robots_demo.squid_inference_realtime) run_washup() (in module experiments.mnist_run)

S

save_normalized_realtime_gif() (in module robots_demo.squid_inference_realtime) save_realtime_gif() (in module robots_demo.squid_inference_realtime) save_realtime_gifs() (in module robots_demo.squid_inference_realtime) score_esn() (in module experiments.mnist_run) selElitistAndTournament() (in module acds.evolutionary.utils) set_eq_distances_from_positions() (acds.archetypes.run.UnicycleNetwork method) set_model_initial_state() (in module experiments.mnist_run) set_seed() (in module experiments.utils)

should_save_gif_for_batch() (in module robots_demo.squid_inference_realtime) sparse_eye_init() (in module acds.archetypes.utils) sparse_recurrent_tensor_init() (in module acds.archetypes.utils) sparse_tensor_init() (in module acds.archetypes.utils) spectral_norm_scaling() (in module acds.archetypes.utils) split_column_line() (in module robots_demo.squid_inference_realtime) step() (acds.evolutionary.environment.SwarmForagingEnv method) SwarmForagingEnv (class in acds.evolutionary.environment)

T

test() (in module robots_demo.train_cobot_classification) (in module robots_demo.train_cobot_regression) (in module robots_demo.train_squid) (in module robots_demo.train_squid_real) (in module robots_demo.train_squid_real_topology) (in module robots_demo.train_squid_topology) (in module robots_demo.train_tomato)

train_epoch() (in module experiments.equilibrium_propagation.models) train_epoch_TS() (in module experiments.equilibrium_propagation.models) TrainedPhysicallyImplementableRandomizedOscillatorsNetwork (class in acds.archetypes) (class in acds.archetypes.trainable_pron)

U

UnicycleNetwork (class in acds.archetypes.run)

UnicycleReservoir (class in acds.archetypes) (class in acds.archetypes.run)

V

VanDerPolOscillatorsNetwork (class in acds.archetypes.vdpon) visual_grid_to_image() (in module acds.evolutionary.utils)

visualize_convergence() (in module experiments.equilibrium_propagation.models) visualize_convergence_TS() (in module experiments.equilibrium_propagation.models)

W

wait_until_file_settles() (in module robots_demo.squid_inference_realtime)